PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG019800.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 239aa    MW: 25728.2 Da    PI: 5.458
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG019800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-1172119454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++  rE+ RRdr+N++f eL +++ +    ++ Kl+Ka iL  A + + +L
  Pavir.1KG019800.2.p  72 SKACREKMRRDRLNDRFLELSSVMNPG---KQAKLDKANILSDAARMLAQL 119
                          6789**********************9...9**************999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1361135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.45568119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-871124No hitNo description
PfamPF000106.2E-972119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1273141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-874125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146863.51E-5127166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDCAGGGGPV EDLLLGGAGD DGDLAIFCDG VPTLAGDGGL GIDGFSGDDC GFEQSNLGKR  60
PRDEPSSSGT KSKACREKMR RDRLNDRFLE LSSVMNPGKQ AKLDKANILS DAARMLAQLR  120
GEAEKLKESN EKLRENIKDL KEEKNELREE KVRLKAEKER LEQQVKAMSA APTGYVPHLP  180
HPAAYHPAAF APFAPPQQAP TNKGAPIPAA FLGMAMWQWL PPTVVDTTQD PKLWPPNA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.139980.0leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0409200.0BT040920.1 Zea mays full-length cDNA clone ZM_BFc0152D09 mRNA, complete cds.
GenBankEU9655850.0EU965585.1 Zea mays clone 287196 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952164.11e-147PREDICTED: transcription factor ILR3-like
SwissprotQ9FH372e-60ILR3_ARATH; Transcription factor ILR3
TrEMBLK3YVD61e-147K3YVD6_SETIT; Uncharacterized protein
STRINGSb04g001200.11e-149(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.19e-41bHLH family protein